{
  "id": "skill_cf9489278b984eef91e08a40b68943be",
  "name": "upstream-regulator-analysis",
  "description": "Integrate ChIP-Atlas TF binding data with RNA-seq differential expression to identify upstream regulators driving transcriptomic changes.",
  "category": "multi_omics",
  "owner_type": "system",
  "created_by_name": "Phylo",
  "verified": false,
  "icon": "flask",
  "keywords": [],
  "default_message": "Identify upstream regulators driving my differential expression results using ChIP-Atlas binding data . .",
  "created_at": "2026-04-29T03:43:33.583000",
  "updated_at": "2026-06-02T00:56:00.039000",
  "entrypoint": "SKILL.md",
  "supporting_files": {
    "references/integration_methods.md": {
      "size": 5557,
      "type": "md",
      "modified": 1777001738,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/__init__.py": {
      "size": 46,
      "type": "py",
      "modified": 1777001738,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/export_all.py": {
      "size": 10981,
      "type": "py",
      "modified": 1777001739,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/generate_all_plots.py": {
      "size": 8489,
      "type": "py",
      "modified": 1777001739,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/generate_report.py": {
      "size": 14678,
      "type": "py",
      "modified": 1777001739,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/load_de_results.py": {
      "size": 5293,
      "type": "py",
      "modified": 1777001739,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/load_example_data.py": {
      "size": 11678,
      "type": "py",
      "modified": 1777001739,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/run_integration_workflow.py": {
      "size": 12704,
      "type": "py",
      "modified": 1777001739,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/score_regulons.py": {
      "size": 5459,
      "type": "py",
      "modified": 1777001739,
      "can_edit": false,
      "editor_kind": null
    }
  },
  "_category_display": "Multi-omics"
}