{
  "id": "skill_caf61714cb394d14b2d099387baec0b0",
  "name": "genetic-variant-annotation",
  "description": "Annotate genomic variants in VCF files with functional effects, clinical significance, and pathogenicity predictions.",
  "category": "genomics_genetics",
  "owner_type": "system",
  "created_by_name": "Phylo",
  "verified": false,
  "icon": "flask",
  "keywords": [],
  "default_message": "Annotate my VCF file with functional effects and clinical significance . .",
  "created_at": "2026-04-29T03:43:33.576000",
  "updated_at": "2026-06-02T00:56:00.029000",
  "entrypoint": "SKILL.md",
  "supporting_files": {
    "references/auto_installation_implementation.md": {
      "size": 7606,
      "type": "md",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "references/consequence_terms.md": {
      "size": 9631,
      "type": "md",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "references/filtering_strategies.md": {
      "size": 19820,
      "type": "md",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "references/installation_guide.md": {
      "size": 10639,
      "type": "md",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "references/pathogenicity_interpretation.md": {
      "size": 12019,
      "type": "md",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "references/qc_guidelines.md": {
      "size": 15663,
      "type": "md",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "references/snpeff_best_practices.md": {
      "size": 10533,
      "type": "md",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "references/tool_selection_guide.md": {
      "size": 12401,
      "type": "md",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "references/troubleshooting_guide.md": {
      "size": 11330,
      "type": "md",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "references/vep_best_practices.md": {
      "size": 9469,
      "type": "md",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/annotate_genes.py": {
      "size": 8175,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/export_results.py": {
      "size": 15166,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/filter_variants.py": {
      "size": 10601,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/install_tools.py": {
      "size": 6309,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/load_example_data.py": {
      "size": 5290,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/parse_snpeff_output.py": {
      "size": 7642,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/parse_vep_output.py": {
      "size": 7013,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/plot_variant_distribution.py": {
      "size": 11139,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/prioritize_variants.py": {
      "size": 9209,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/run_snpeff.py": {
      "size": 10493,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/run_vep.py": {
      "size": 9409,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/select_tool.py": {
      "size": 6115,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/test_complete_workflow.py": {
      "size": 10985,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/test_pickle_load.py": {
      "size": 3182,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/validate_vcf.py": {
      "size": 10187,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    },
    "scripts/verify_changes.py": {
      "size": 6981,
      "type": "py",
      "modified": 1777001734,
      "can_edit": false,
      "editor_kind": null
    }
  },
  "_category_display": "Genomics & Genetics"
}